Publications

2018

Hu Y, Lin J, Hu J, Hu G, Wang K, Zhang H, Reilly MP, Li M. PennDiff: Detecting Differential Alternative Splicing and Transcription by RNA Sequencing. (2018) Bioinformatics. doi:10.1093/bioinformatics/bty097.

Lin J and Musunuru K. From Genotype to Phenotype: A Primer on the Functional Follow-Up of Genome-Wide Association Studies in Cardiovascular Disease. (2018) Circ Genom Precis Med. doi: 10.1161/CIRCGEN.117.001946.

2017

Zhang H, Xue C, Wang Y, Shi J, Zhang X, Li W, Nunez S, Foulkes AS, Lin J, Hinkle CC, Yang W, Morrisey EE, Rader DJ, Li M, Reilly MP. Deep RNA Sequencing Uncovers a Repertoire of Human Macrophage Long Intergenic Noncoding RNAs Modulated by Macrophage Activation and Associated With Cardiometabolic Diseases. (2017) J Am Heart Assoc. doi: 10.1161/JAHA.117.007431.

2016

Lin J, Hu Y, Nunez S, Foulkes AS, Cieply B, Xue C, Gerelus M, Li W, Zhang H, Rader DJ, Musunuru K, Li M, Reilly MP. Transcriptome-Wide Analysis Reveals Modulation of Human Macrophage Inflammatory Phenotype Through Alternative Splicing. (2016) Arterioscler Thromb Vasc Biol. 36:1434-47. (Editors' Choice editorial in Science Translational Medicine).

Lin J and Musunuru K. (2016) Genome Engineering Tools for Building Cellular Models of Disease. FEBS J. 283:3222-31

2015

Lin J, Zhang X, Xue C, Zhang H, Shashaty MG, Gosai S, Meyer NJ, Grazioli, A, Hinkle C, Caughey J, Li W, Susztak K, Gregory BD, Li M, Reilly MP. (2015) The Long Noncoding RNA Landscape in Hypoxic and Inflammatory Renal Epithelial Injury. Am J Physiol Renal Physiol. 309:901-13.

Lin J,* Fernandez H,* Shashaty MGS, Negoianu D, Testani JM, Berns JS, Parikh CR, Wilson FP. (2015) False Positive Rate of Acute Kidney Injury Using Consensus Creatinine-Based Criteria. Clin J Am Soc Nephrol. 10:1723-31. *Contributed equally.

Lin J, Khetarpal SA, Terembula K, Reilly MP, Wilson FP. (2015), Relation of atherogenic lipoproteins with estimated glomerular filtration rate decline: a longitudinal study. BMC Nephrol. doi: 10.1186/s12882-015-0122-5.

Wilson FP, Shashaty M, Testani J, Aqeel I, Borovskiy Y, Ellenberg S, Feldman H, Fernandez H, Gitelman Y, Lin J, Negoianu D, Parikh CR, Reese PP, Urbani R, Fuchs BD. (2015), Automated, electronic alerts for acute kidney injury: a single-blind, parallel-group, randomised controlled trial. Lancet. 385:1966-74.

2014

Lin J, Reilly MP, Terembula K, Wilson FP. (2014), Plasma Lipoprotein(a) Levels Are Associated with Mild Renal Impairment in Type 2 Diabetics Independent of Albuminuria. PLoS ONE 9(12): e114397. doi:10.1371/journal.pone.0114397.

2013

Wilson FP, Bansal A, Jasti SK, Lin J, Shashaty MS, Berns JS, Feldman HI, Fuchs BD. (2013), The Impact of Documentation of Acute Kidney Injury on Mortality.  Clinical Nephrology.  80:417-25.

Wilson FP, Yang W, Schrauben S, Machado C, Lin J, Feldman HI. (2013), Sundays and Mortality in Patients with AKI. Clin J Am Soc Nephrol. 11:1863-9.